Construction of pan-genome graphs from genome alignments with Minigraph-Cactus

UC Santa Cruz Institute for Genomics, University of California, Santa Cruz, Santa Cruz, CA, USA.

Glenn Hickey, Jean Monlong, Adam M. Novak, Jordan M. Eizenga, Mobin Asri, Xian H. Chang, Mark Diekhans, Marina Haukness, David Haussler, Julian K. Lucas, Charles Markello, Karen H. Miga, Hugh E. Olsen , Trevor Pesout, Jouni Sirén and Benedict Paten

Institute for Medical Biometrics and Bioinformatics, Faculty of Medicine, Heinrich Heine University of Düsseldorf, Düsseldorf, Germany

Jana Ebler and Tobias Marshall

Center for Digital Medicine, Heinrich Heine University of Düsseldorf, Düsseldorf, Germany

Jana Ebler, Daniel Doerr, Peter Ebert, Jana Ebler, Hugo Magalhães, Pierre Marijon, Tobias Marschall & Tobias Marschall

Center for Computational and Genomic Medicine, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA.

yan gao

Department of Information Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.

Haoyu Cheng, Justin Chu, Xiaowen Feng, and Heng Li

Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

Haoyu Cheng, Xiaowen Feng, Carlos García Girón and Heng Li

Division of Oncology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.

Haley J. Abel

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.

Lucinda L. Antonacci-Fulton, Sarah Cody, Robert S. Fulton, Allison A. Regier, Chad Tomlinson, and Ting Wang

Google LLC, Mountain View, CA, USA

Gunjan Baid, Anastasiya Belyaeva, Andrew Carroll, Pi-Chuan Chang, Daniel E. Cook, Alexey Kolesnikov, Maria Nattestad, and Kishwar Shafin

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.

Carl A. Baker, Evan E. Eichler, William T. Harvey, Kendra Hoekzema, Jennifer Kordosky, Alexandra P. Lewis, Katherine M. Munson, David Porubsky, and Mitchell R. Vollger

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK

Konstantinos Billis, Susan Fairley, Paul Flicek, Adam Frankish, Leanne Haggerty, Thibaut Hourlier, Jan O. Korbel, Fergal J. Martin, and Francesca Floriana Tricomi

Department of Human Genetics, McGill University, Montreal, QC, Canada

Guillermo Bourque

Canadian Center for Computational Genomics, McGill University, Montreal, QC, Canada

Guillermo Bourque

Institute for the Advanced Study of Human Biology (WPI-ASHBi), Kyoto University, Kyoto, Japan

Guillermo Bourque

Institute of Genetics and Biophysics, National Research Council, Naples, Italy

Silvia Buonaiuto and Vincenza Colonna

Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.

Marcos JP Chaisson and Tsung-Yu Lu

Department of Genetics, Genomics, and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA.

Vincenza Colonna, Christian Fischer, Erik Garrison, Andrea Guarracino, Pjotr ​​Prins and Flavia Villani

Arizona State University, Barrett and O’Connor Washington Center, Washington, DC, USA.

Robert M. Cook-Deegan

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, CA, USA.

Omar E. Cornejo and Samuel Sacco

Institute for Medical Biometrics and Bioinformatics, Faculty of Medicine, Heinrich Heine University of Düsseldorf, Düsseldorf, Germany

Daniel Doerr, Peter Ebert, Jana Ebler, Hugo Magalhães, Pierre Marijon and Tobias Marschall

Basic Unit for Bioinformatics, Faculty of Medicine, Heinrich Heine University of Düsseldorf, Düsseldorf, Germany

Peter Ebert

Howard Hughes Medical Institute, Chevy Chase, MD, USA

Evan E. Eichler, David Haussler, and Erich D. Jarvis

Vertebrate Genome Laboratory, Rockefeller University, New York, NY, USA.

Olivier Fedrigo, Giulio Formenti, Erich D. Jarvis, and Jacquelyn Mountcastle

National Institutes of Health (NIH)–National Human Genome Research Institute, Bethesda, MD, USA.

Adam L. Felsenfeld, Baergen I. Schultz, Michael W. Smith, and Heidi J. Sofia

Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA.

Robert S. Fulton and Ting Wang

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Copenhagen, Denmark

shilpa garg

Institute for Society and Genetics, College of Letters and Science, University of California, Los Angeles, Los Angeles, CA, USA.

Garrison of Nanibaa’ A.

Institute for Precision Health, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.

Garrison of Nanibaa’ A.

Division of General Internal Medicine and Health Services Research, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.

Garrison of Nanibaa’ A.

Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz, CA, USA.

Richard E Green

Dovetail Genomics, Scotts Valley, CA, USA.

Richard E Green

Quantitative Biological Sciences, McGill University, Montreal, QC, Canada

Christian Groza

Center for Genomic Research, Human Technopole, Milan, Italy

andrea guarracino

Department of Genetics, Yale University School of Medicine, New Haven, CT, USA.

Ira M. Hall, Wen-Wei Liao and Shuangjia Lu

Center for Genomic Health, Yale University School of Medicine, New Haven, CT, USA.

Ira M. Hall and Wen-Wei Liao

Center for Quantitative Biology (QBiC), University of Tübingen, Tübingen, Germany

Simon Heumos

Biomedical Data Science, Department of Computer Science, University of Tübingen, Tübingen, Germany

Simon Heumos

Tree of Life, Wellcome Sanger Institute, Hinxton, Cambridge, UK

Kerstin Howe and Jonathan MD Wood

Northeastern University, Boston, MA, USA

jain miten

Neurogenetics of Language Laboratory, Rockefeller University, New York, NY, USA.

Erich D Jarvis

Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.

Hanlee P. Ji and Ho Joon Lee

Institute for Genomic Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

Eimear E Kenny

Program in Bioethics and Institute of Human Genetics, University of California, San Francisco, San Francisco, CA, USA.

Barbara A. Koenig

European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany

Jan O Korbel

Genome Informatics Section, Computational Genomics and Statistics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.

Sergey Koren, Ann McCartney, Sergey Nurk, Adam M. Phillippy, Mikko Rautiainen, Arang Rhie, and Brian Walenz

Division of Biology and Biomedical Sciences, Washington University School of Medicine, St. Louis, MO, USA.

Wen Wei Liao

Department of Computer Science, Barcelona Supercomputing Center, Barcelona, ​​Spain

Santiago Marco Alone

Department of Computer Architecture and Operative Systems, Autonomous University of Barcelona, ​​Barcelona, ​​Spain

Santiago Marco Alone

Materials Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA.

Jennifer McDaniel, Nathan D. Olson, Justin Wagner, and Justin M. Zook

Coriell Institute for Medical Research, Camden, NJ, USA.

Matthew W. Mitchell

Department of Computer Science, University of Pisa, Pisa, Italy

Moses Njagi Mwaniki

Department of Public Health Sciences, University of California, Davis, Davis, CA, USA.

Alice B. Popejoy

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.

Daniela Puiu and Aleksey V. Zimin

Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine of the Helmholtz Association, Berlin, Germany

Ashley D. Sanders

National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.

Valerie A. Schneider and Françoise Thibaud-Nissen

Center for Health Data Science, University of Copenhagen, Copenhagen, Denmark

Jonas A Sibbesen

Al Jalila Center of Excellence in Genomics, Al Jalila Children’s Specialty Hospital, Dubai, United Arab Emirates

Ahmad N. Abou Tayoun

Center for Genomic Discovery, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates

Ahmad N. Abou Tayoun

Division of Medical Genetics, University of Washington School of Medicine, Seattle, WA, USA.

Mitchell R Vollger

Center for Computational Biology, Johns Hopkins University, Baltimore, MD, USA.

Alexey V. Zimin